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7a1f6a27db
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94 Commits

Author SHA1 Message Date
Kamil Śliwak
7a1f6a27db [yul-phaser] More data accessors in metric and algorithm classes 2020-03-18 13:30:58 +01:00
Kamil Śliwak
2563e7a7e3 [yul-phaser] Add --no-randomise-duplicates option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
18f0d6eb94 [yul-phaser] AlgorithmRunner: Duplicate chromosome randomisation 2020-03-18 13:30:58 +01:00
Kamil Śliwak
b11eff7c88 [yul-phaser] Add options for all algorithm-specific parameters 2020-03-18 13:30:58 +01:00
Kamil Śliwak
55ea92dbec [yul-phaser] Add --min-chromosome-length and --max-chromosome-length options 2020-03-18 13:30:58 +01:00
Kamil Śliwak
3f7ada1689 [yul-phaser] Add --population-autosave option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
1b5960111d [yul-phaser] AlgorithmRunner: Population autosave 2020-03-18 13:30:58 +01:00
Kamil Śliwak
04c7c56d84 [yul-phaser] Add --population-from-file option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
ff99d25bc3 [yul-phaser] Common: Add readLinesFromFile() 2020-03-18 13:30:58 +01:00
Kamil Śliwak
5e00b57e02 [yul-phaser] Add --population option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
af090876b5 [yul-phaser] Add --random-population option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
d8e5f8f965 [yul-phaser] Add --rounds option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
63f13c5b18 [yul-phaser] Add --chromosome-repetitions option 2020-03-18 13:30:58 +01:00
Kamil Śliwak
760e7c3cc5 [yul-phaser] Don't return exit code from Phaser::main() and just assume 0 if it does not throw. 2020-03-16 20:32:59 +01:00
Kamil Śliwak
d86b5019dc [yul-phaser] Phaser: Returning exit code 0 instead of 2 when --help is requested 
- I don't think we really need to discern it from normal operation. It's what user requested so it's a success.
 2020-03-16 20:32:59 +01:00
Kamil Śliwak
f05a07d0cc [yul-phaser] Create BadInput exception hierarchy and make exceptions used by Phaser more specific 2020-03-16 20:32:59 +01:00
Kamil Śliwak
53803801f7 [yul-phaser] Move handling of boost::program_options::error to the top-level exception handler 2020-03-16 20:32:59 +01:00
Kamil Śliwak
4e90c598b3 [yul-phaser] main: Dealing with uncaught exceptions 2020-03-16 20:32:59 +01:00
Kamil Śliwak
c7051e1386 [yul-phaser] Program: Explicitly return variants values 
- Otherwise the code fails to build with on GCC 7.4.0 on Ubuntu in the CI pipeline
 2020-03-16 20:32:59 +01:00
Kamil Śliwak
8ca0d90aae [yul-phaser] Returning an ErrorList from Program::load() if program has errors and printing them in Phaser 2020-03-16 20:32:59 +01:00
Kamil Śliwak
9ef63a9789 [yul-phaser] Program: Output operator for ErrorList 
- It does not seem universal enough to put it in liblangutil but in the scope of yul-phaser it's generic enough so I'm going to keep it together with Program.
 2020-03-16 20:32:59 +01:00
Kamil Śliwak
98fcba8ef3 [yul-phaser] Phaser: Reimplement << and >> operators using serializeChoice() and deserializeChoice() 2020-03-13 11:21:23 +01:00
Kamil Śliwak
deaf1d0c6f [yul-phaser] Add serializeChoice() and deserializeChoice() 2020-03-13 11:21:23 +01:00
Kamil Śliwak
0c3de9ef99 [yul-phaser] Add Common module 2020-03-13 11:21:23 +01:00
Kamil Śliwak
a80512a71d [yul-phaser] Phaser: Name option parameters in command-line help 2020-03-13 11:21:23 +01:00
Kamil Śliwak
df90cf5d7a [yul-phaser] Phaser: Make all option descriptions consistenly end with a full stop 2020-03-13 11:21:23 +01:00
Kamil Śliwak
ffc21632b6 [yul-phaser] Phaser: Split command-line option description into groups 2020-03-13 11:21:23 +01:00
Kamil Śliwak
7cf5c4e266 [yul-phaser] Phaser: Extract preparation of option description into a separate function 2020-03-13 11:21:23 +01:00
Kamil Śliwak
2d177c7623 [yul-phaser] Phaser: Refactor object creation in runAlgorithm() into a set of factories 2020-03-13 11:21:23 +01:00
Kamil Śliwak
25e81f6bd3 [yul-phaser] AlgorithmRunner: Count rounds from 1 2020-03-13 11:21:23 +01:00
Kamil Śliwak
2110bf10cf [yul-phaser] AlgorithmRunner: Create a structure to store runner's options 2020-03-13 11:21:23 +01:00
Kamil Śliwak
b8244f6a43 [yul-phaser] Extract the code that controls execution of algorithm rounds from GeneticAlgorithm into AlgorithmRunner 2020-03-13 11:21:23 +01:00
Kamil Śliwak
0c1b88508e [yul-phaser] Refactor the code from main into a Phaser class 2020-03-13 11:21:23 +01:00
Kamil Śliwak
3e3887dc9a [yul-phaser] main: Add missing underscores to parameter names 2020-03-13 11:21:23 +01:00
Kamil Śliwak
0fa2aa62b2 [yul-phaser] main: Lower gene mutation chance in GEWEP 2020-03-09 13:21:48 +01:00
Kamil Śliwak
763bdb1d51 [yul-phaser] Change the design of crossover operators so that they produce a single chromosome rather than a pair 2020-03-09 13:21:48 +01:00
cameel
a3e97108c5 [yul-phaser] main: Add GenerationalElitistWithExclusivePools as an option and make it the default 2020-03-09 13:21:48 +01:00
Kamil Śliwak
0c61f6d18f [yul-phaser] main: Command-line option for algorithm selection 2020-03-09 13:21:48 +01:00
Kamil Śliwak
fc4fedb214 [yul-phaser] Add GenerationalElitistWithExclusivePools algorithm 2020-03-09 13:21:48 +01:00
cameel
7e80ac861f [yul-phaser] Population: Add mutate() and crossover() methods 2020-03-09 13:21:48 +01:00
Kamil Śliwak
c941eaf5d6 [yul-phaser] Add randomPointCrossover() and fixedPointCrossover() operators 2020-03-09 13:21:48 +01:00
cameel
3fdb4ca607 [yul-phaser] Add geneRandomisation(), geneDeletion(), geneAddition and alternativeMutations() 2020-03-09 13:21:48 +01:00
Kamil Śliwak
f9f2bdb5f7 [yul-phaser] Add RandomPairSelection and PairMosaicSelection classes 2020-03-09 13:21:48 +01:00
cameel
44932dc85a [yul-phaser] Base class for pair selections 2020-03-09 13:21:48 +01:00
Kamil Śliwak
7c7ebbb35f [yul-phaser] main: Rename initializeRNG() to initialiseRNG() 2020-03-09 13:21:48 +01:00
Kamil Śliwak
66d733fbac [yul-phaser] main: Increase the number of chromosomes in the initial population to 20 2020-02-25 16:06:16 +01:00
Kamil Śliwak
3aaca31c31 [yul-phaser] main: Change the number of chromosomes preserved in every round of the algorithm to 1 2020-02-25 16:06:16 +01:00
Kamil Śliwak
4aac7d1673 [yul-phaser] main: Switch from using Population::run() to RandomAlgorithm 2020-02-25 16:06:16 +01:00
Kamil Śliwak
e1b8b64f05 [yul-phaser] Population: Remove no longer used methods for running algorithm steps 
- They have been superseded by objects from GeneticAlgorithms.h
 2020-02-25 16:06:16 +01:00
cameel
67fbafab8f [yul-phaser] Add RandomAlgorithm 2020-02-25 16:06:16 +01:00