add command to (slowly) prune lotus chain datastore

chain/store/store.go

@@ -1183,13 +1183,6 @@ func recurseLinks(bs bstore.Blockstore, walked *cid.Set, root cid.Cid, in []cid.
 }
 
 func (cs *ChainStore) Export(ctx context.Context, ts *types.TipSet, inclRecentRoots abi.ChainEpoch, skipOldMsgs bool, w io.Writer) error {
-	if ts == nil {
-		ts = cs.GetHeaviestTipSet()
-	}
-
-	seen := cid.NewSet()
-	walked := cid.NewSet()
-
 	h := &car.CarHeader{
 		Roots:   ts.Cids(),
 		Version: 1,
@@ -1199,6 +1192,28 @@ func (cs *ChainStore) Export(ctx context.Context, ts *types.TipSet, inclRecentRo
 		return xerrors.Errorf("failed to write car header: %s", err)
 	}
 
+	return cs.WalkSnapshot(ctx, ts, inclRecentRoots, skipOldMsgs, func(c cid.Cid) error {
+		blk, err := cs.bs.Get(c)
+		if err != nil {
+			return xerrors.Errorf("writing object to car, bs.Get: %w", err)
+		}
+
+		if err := carutil.LdWrite(w, c.Bytes(), blk.RawData()); err != nil {
+			return xerrors.Errorf("failed to write block to car output: %w", err)
+		}
+
+		return nil
+	})
+}
+
+func (cs *ChainStore) WalkSnapshot(ctx context.Context, ts *types.TipSet, inclRecentRoots abi.ChainEpoch, skipOldMsgs bool, cb func(cid.Cid) error) error {
+	if ts == nil {
+		ts = cs.GetHeaviestTipSet()
+	}
+
+	seen := cid.NewSet()
+	walked := cid.NewSet()
+
 	blocksToWalk := ts.Cids()
 
 	walkChain := func(blk cid.Cid) error {
@@ -1206,15 +1221,15 @@ func (cs *ChainStore) Export(ctx context.Context, ts *types.TipSet, inclRecentRo
 			return nil
 		}
 
+		if err := cb(blk); err != nil {
+			return err
+		}
+
 		data, err := cs.bs.Get(blk)
 		if err != nil {
 			return xerrors.Errorf("getting block: %w", err)
 		}
 
-		if err := carutil.LdWrite(w, blk.Bytes(), data.RawData()); err != nil {
-			return xerrors.Errorf("failed to write block to car output: %w", err)
-		}
-
 		var b types.BlockHeader
 		if err := b.UnmarshalCBOR(bytes.NewBuffer(data.RawData())); err != nil {
 			return xerrors.Errorf("unmarshaling block header (cid=%s): %w", blk, err)
@@ -1254,14 +1269,11 @@ func (cs *ChainStore) Export(ctx context.Context, ts *types.TipSet, inclRecentRo
 				if c.Prefix().Codec != cid.DagCBOR {
 					continue
 				}
-				data, err := cs.bs.Get(c)
+
-				if err != nil {
+				if err := cb(c); err != nil {
-					return xerrors.Errorf("writing object to car (get %s): %w", c, err)
+					return err
 				}
 
-				if err := carutil.LdWrite(w, c.Bytes(), data.RawData()); err != nil {
-					return xerrors.Errorf("failed to write out car object: %w", err)
-				}
 			}
 		}
 

cmd/lotus-shed/main.go

@@ -35,6 +35,7 @@ func main() {
 		mathCmd,
 		mpoolStatsCmd,
 		exportChainCmd,
+		stateTreePruneCmd,
 	}
 
 	app := &cli.App{

cmd/lotus-shed/pruning.go

@@ -0,0 +1,290 @@
+package main
+
+import (
+	"context"
+	"fmt"
+
+	"github.com/filecoin-project/go-state-types/abi"
+	"github.com/filecoin-project/lotus/chain/store"
+	"github.com/filecoin-project/lotus/chain/vm"
+	"github.com/filecoin-project/lotus/extern/sector-storage/ffiwrapper"
+	"github.com/filecoin-project/lotus/lib/blockstore"
+	"github.com/filecoin-project/lotus/node/repo"
+	"github.com/ipfs/bbloom"
+	"github.com/ipfs/go-cid"
+	"github.com/ipfs/go-datastore"
+	"github.com/ipfs/go-datastore/query"
+	dshelp "github.com/ipfs/go-ipfs-ds-help"
+	"github.com/urfave/cli/v2"
+	"golang.org/x/xerrors"
+)
+
+type cidSet interface {
+	Add(cid.Cid)
+	Has(cid.Cid) bool
+	HasRaw([]byte) bool
+	Len() int
+}
+
+type bloomSet struct {
+	bloom *bbloom.Bloom
+}
+
+func newBloomSet(size int64) (*bloomSet, error) {
+	b, err := bbloom.New(float64(size), 3)
+	if err != nil {
+		return nil, err
+	}
+
+	return &bloomSet{bloom: b}, nil
+}
+
+func (bs *bloomSet) Add(c cid.Cid) {
+	bs.bloom.Add(c.Hash())
+
+}
+
+func (bs *bloomSet) Has(c cid.Cid) bool {
+	return bs.bloom.Has(c.Hash())
+}
+
+func (bs *bloomSet) HasRaw(b []byte) bool {
+	return bs.bloom.Has(b)
+}
+
+func (bs *bloomSet) Len() int {
+	return int(bs.bloom.ElementsAdded())
+}
+
+type mapSet struct {
+	m map[string]struct{}
+}
+
+func newMapSet() *mapSet {
+	return &mapSet{m: make(map[string]struct{})}
+}
+
+func (bs *mapSet) Add(c cid.Cid) {
+	bs.m[string(c.Hash())] = struct{}{}
+}
+
+func (bs *mapSet) Has(c cid.Cid) bool {
+	_, ok := bs.m[string(c.Hash())]
+	return ok
+}
+
+func (bs *mapSet) HasRaw(b []byte) bool {
+	_, ok := bs.m[string(b)]
+	return ok
+}
+
+func (bs *mapSet) Len() int {
+	return len(bs.m)
+}
+
+var stateTreePruneCmd = &cli.Command{
+	Name:        "state-prune",
+	Description: "Deletes old state root data from local chainstore",
+	Flags: []cli.Flag{
+		&cli.StringFlag{
+			Name:  "repo",
+			Value: "~/.lotus",
+		},
+		&cli.Int64Flag{
+			Name:  "keep-from-lookback",
+			Usage: "keep stateroots at or newer than the current height minus this lookback",
+			Value: 1800, // 2 x finality
+		},
+		&cli.IntFlag{
+			Name:  "delete-up-to",
+			Usage: "delete up to the given number of objects (used to run a faster 'partial' sync)",
+		},
+		&cli.BoolFlag{
+			Name:  "use-bloom-set",
+			Usage: "use a bloom filter for the 'good' set instead of a map, reduces memory usage but may not clean up as much",
+		},
+		&cli.BoolFlag{
+			Name:  "dry-run",
+			Usage: "only enumerate the good set, don't do any deletions",
+		},
+		&cli.BoolFlag{
+			Name:  "only-ds-gc",
+			Usage: "Only run datastore GC",
+		},
+		&cli.IntFlag{
+			Name:  "gc-count",
+			Usage: "number of times to run gc",
+			Value: 20,
+		},
+	},
+	Action: func(cctx *cli.Context) error {
+		ctx := context.TODO()
+
+		fsrepo, err := repo.NewFS(cctx.String("repo"))
+		if err != nil {
+			return err
+		}
+
+		lkrepo, err := fsrepo.Lock(repo.FullNode)
+		if err != nil {
+			return err
+		}
+
+		defer lkrepo.Close() //nolint:errcheck
+
+		ds, err := lkrepo.Datastore("/chain")
+		if err != nil {
+			return err
+		}
+
+		defer ds.Close()
+
+		mds, err := lkrepo.Datastore("/metadata")
+		if err != nil {
+			return err
+		}
+		defer mds.Close()
+
+		if cctx.Bool("only-ds-gc") {
+			gcds, ok := ds.(datastore.GCDatastore)
+			if ok {
+				fmt.Println("running datastore gc....")
+				for i := 0; i < cctx.Int("gc-count"); i++ {
+					if err := gcds.CollectGarbage(); err != nil {
+						return xerrors.Errorf("datastore GC failed: %w", err)
+					}
+				}
+				fmt.Println("gc complete!")
+				return nil
+			} else {
+				return fmt.Errorf("datastore doesnt support gc")
+			}
+		}
+
+		bs := blockstore.NewBlockstore(ds)
+
+		cs := store.NewChainStore(bs, mds, vm.Syscalls(ffiwrapper.ProofVerifier))
+		if err := cs.Load(); err != nil {
+			return fmt.Errorf("loading chainstore: %w", err)
+		}
+
+		var goodSet cidSet
+		if cctx.Bool("use-bloom-set") {
+			bset, err := newBloomSet(10000000)
+			if err != nil {
+				return err
+			}
+			goodSet = bset
+		} else {
+			goodSet = newMapSet()
+		}
+
+		ts := cs.GetHeaviestTipSet()
+
+		rrLb := abi.ChainEpoch(cctx.Int64("keep-from-lookback"))
+
+		if err := cs.WalkSnapshot(ctx, ts, rrLb, true, func(c cid.Cid) error {
+			if goodSet.Len()%20 == 0 {
+				fmt.Printf("\renumerating keep set: %d             ", goodSet.Len())
+			}
+			goodSet.Add(c)
+			return nil
+		}); err != nil {
+			return fmt.Errorf("snapshot walk failed: %w", err)
+		}
+
+		fmt.Println()
+		fmt.Printf("Succesfully marked keep set! (%d objects)\n", goodSet.Len())
+
+		if cctx.Bool("dry-run") {
+			return nil
+		}
+
+		var b datastore.Batch
+		var batchCount int
+		markForRemoval := func(c cid.Cid) error {
+			if b == nil {
+				nb, err := ds.Batch()
+				if err != nil {
+					return fmt.Errorf("opening batch: %w", err)
+				}
+
+				b = nb
+			}
+			batchCount++
+
+			if err := b.Delete(dshelp.MultihashToDsKey(c.Hash())); err != nil {
+				return err
+			}
+
+			if batchCount > 100 {
+				if err := b.Commit(); err != nil {
+					return xerrors.Errorf("failed to commit batch deletes: %w", err)
+				}
+				b = nil
+				batchCount = 0
+			}
+			return nil
+		}
+
+		res, err := ds.Query(query.Query{KeysOnly: true})
+		if err != nil {
+			return xerrors.Errorf("failed to query datastore: %w", err)
+		}
+
+		dupTo := cctx.Int("delete-up-to")
+
+		var deleteCount int
+		var goodHits int
+		for {
+			v, ok := res.NextSync()
+			if !ok {
+				break
+			}
+
+			bk, err := dshelp.BinaryFromDsKey(datastore.RawKey(v.Key[len("/blocks"):]))
+			if err != nil {
+				return xerrors.Errorf("failed to parse key: %w", err)
+			}
+
+			if goodSet.HasRaw(bk) {
+				goodHits++
+				continue
+			}
+
+			nc := cid.NewCidV1(cid.Raw, bk)
+
+			deleteCount++
+			if err := markForRemoval(nc); err != nil {
+				return fmt.Errorf("failed to remove cid %s: %w", nc, err)
+			}
+
+			if deleteCount%20 == 0 {
+				fmt.Printf("\rdeleting %d objects (good hits: %d)...      ", deleteCount, goodHits)
+			}
+
+			if dupTo != 0 && deleteCount > dupTo {
+				break
+			}
+		}
+
+		if b != nil {
+			if err := b.Commit(); err != nil {
+				return xerrors.Errorf("failed to commit final batch delete: %w", err)
+			}
+		}
+
+		gcds, ok := ds.(datastore.GCDatastore)
+		if ok {
+			fmt.Println("running datastore gc....")
+			for i := 0; i < cctx.Int("gc-count"); i++ {
+				if err := gcds.CollectGarbage(); err != nil {
+					return xerrors.Errorf("datastore GC failed: %w", err)
+				}
+			}
+			fmt.Println("gc complete!")
+		}
+
+		return nil
+	},
+}

go.mod

@@ -49,6 +49,7 @@ require (
 	github.com/hashicorp/go-multierror v1.1.0
 	github.com/hashicorp/golang-lru v0.5.4
 	github.com/influxdata/influxdb1-client v0.0.0-20191209144304-8bf82d3c094d
+	github.com/ipfs/bbloom v0.0.4
 	github.com/ipfs/go-bitswap v0.2.20
 	github.com/ipfs/go-block-format v0.0.2
 	github.com/ipfs/go-blockservice v0.1.4-0.20200624145336-a978cec6e834